Rna


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VARNA (Visualization Applet for RNA)  v.3.8

VARNA (Visualization Applet for RNA) is a Java lightweight component and applet for drawing the RNA secondary structure. Create RNA structures with this tool.

CLC Sequence Viewer  v.6. 5. 2003

CLC Sequence Viewer creates a software environment enabling users to make a large number of bioinformatics analyses, combined with smooth data management, and excellent graphical viewing and output options.





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ArrayExpress R Workbench  v.1. 1. 2001

ArrayExpress is an R based pipeline for pre-processing, expression estimation and data quality assessment of high throughput sequencing transcriptional profiling (RNA-seq) data sets.

CrossLink  v.2 1

CrossLink is a versatile tool for the exploration of relationships between RNA sequences. After a parametrization phase, CrossLink uses the established tools BLAST, Vmatch and RNAhybrid to determine sequence relationships.

GeneView  v.8.5.1.102

GeneView is a software tool that allows the visualization of genetic sequence data. The data to be visualized are taken from the GenBank of NIH (National Institute of Health), an annotated collection of publicly accessible DNA and RNA sequences.

MiRPI  v.1.0

MicroRNAs (miRNAs) are newly discovered class of non-coding small RNAs of 20-24 nucleotide length that regulate gene and protein expression in plants and animals. MiRNAs have so far been identified mostly by specific cloning of small RNA molecules,

4SALE  v.1.5

4SALE is a software for Synchronous RNA Sequence and Secondary Structure Alignment and Editing. 4SALE now integrates lara as a sequence and secondary structure aligment alternative to the 4SALE alignment option. In sequence analysis the multiple

XRNA  v.1.1.12

Create RNA secondary structure diagrams fast and easy. XRNA is a Java based suite of tools for the creation, annotation and display of RNA secondary structure diagrams.

AltAnalyze  v.2.0.7.1 Development

AltAnalyze is a freely available, cross-platform software designed to assess changes in protein sequence, domain composition, and microRNA targeting from user RNA sequencing (RNASeq) or microarray data. To do this,

RNAstructure  v.5.1

RNAstructure is a complete package for RNA and DNA secondary structure prediction and analysis.

SeqWord Sniffer  v.1.0

SeqWord Sniffer is a Genomic DNA sequence automatic searcher, do an automatic search in genomic DNA sequences for loci enriched with the horizontally transferred elements, fitness genes, giant genes, genes for ribosomal RNA and proteins.

ProfDistS  v.0.9.9

ProfDistS analyze RNA secondary structures. Profile Neighbor Joining (PNJ) as implemented in ProfDist is computationally efficient in reconstructing very large trees.

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